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|Image in the Sand||Sisko, now retreated back on Earth to gather his wits, meets an old friend.||Unknown|
|Shadows and Symbols||Sisko searches for a lost Orb.||52152.6|
|Afterimage||In addition to coping with the memories of her "past lives," Ezri Dax must deal with the range of reactions her presence generates on Deep Space Nine.||Unknown|
|Take Me Out to the Holosuite||A group of Deep Space Nine rookies answer Sisko's challenge to try and beat a Vulcan baseball team.
|Chrysalis||A group of genetically enhanced humans, once under Bashir's care, escape from their medical facility home in the hopes that the doctor — who himself was genetically engineered as a child — can cure their friend Sarina.
|Treachery, Faith, and the Great River||Odo is lured to a secret meeting site, where he finds himself face to face with Weyoun, the Vorta leader of the enemy Dominion.
|Once More Unto the Breach||Worf is surprised to be paid a visit by Kor, an aging Klingon war hero.
|The Siege of AR-558||A brutal battle on planet AR-558 has far reaching consequences for young Nog.||Unknown|
|Covenant||Dukat returns and he wants Kira to join his cult of Pah-wraith followers.
|It's Only a Paper Moon||After losing his leg in battle, a somber Nog returns to the space station to recuperate.||Unknown|
|Prodigal Daughter||Ezri Dax returns to her home and family while trying to gather information on the missing Miles O'Brien.||Unknown|
|The Emperor's New Cloak||Grand Nagus Zek is abducted and held hostage by Alliance members from the mirror universe.
|Field of Fire||Ezri must solve a series of murders by summoning Joran, one of her previous incarnations.||Unknown|
|Chimera||Odo returns from a conference with an unexpected guest: a Changeling who tracked and boarded his runabout.||Unknown|
|Badda-Bing Badda-Bang||Vic's is about to be taken over by the heavy-handed mobster Frankie Eyes.||Unknown|
|Inter Arma Enim Silent Leges||On the eve of Dr. Bashir's departure for a conference on the Romulan homeworld, he's visited by Sloan, the director of Section 31, a secret and unsanctioned extremist entity within Starfleet Intelligence.||Unknown|
|Penumbra||Worf is missing in action and Ezri takes it upon herself to find him.||Unknown|
|'Til Death Do Us Part||Sisko and Kasidy plan to marry, but circumstances are not in their favor. Meanwhile, Dukat returns posing as a simple farmer.||Unknown|
|Strange Bedfellows||Kasidy must adjust to her new role in life, while new Dominion alliances are formed.
|The Changing Face of Evil||The crew's relief at Worf and Ezri's safe return is tempered by reports that the Breen have attacked Starfleet Headquarters on Earth||Unknown|
|When It Rains...||Kai Winn discovers how to unleash evil, while Damar's rebel movement gains ground.||Unknown|
|Tacking Into the Wind||Bashir works on a cure for Odo's debilitating illness, while Martok assumes power following the death of Gowron.
|Extreme Measures||Bashir gets inside the mind of Section 31's Sloan in an attempt to find a cure for the Founder's disease.
|The Dogs of War||Bashir and Ezri's feelings for each other increase, as do the consequences of the Dominion war.
|What You Leave Behind, Part I||As Cardassians revolt against the Dominion, the Federation and its allies start to get an upper hand in the war. Meanwhile evil brews from another front.||Unknown|
|What You Leave Behind, Part II||The confrontation with the Dominion comes to a climax, as does Sisko's fate.